This site uses cookies. By continuing to use this site you agree to our use of cookies. To find out more, see our Privacy and Cookies policy.

Formation of Glycerol through Hydrogenation of CO Ice under Prestellar Core Conditions

, , , , , and

Published 2017 June 14 © 2017. The American Astronomical Society. All rights reserved.
, , Citation G. Fedoseev et al 2017 ApJ 842 52 DOI 10.3847/1538-4357/aa74dc

Download Article PDF
DownloadArticle ePub

You need an eReader or compatible software to experience the benefits of the ePub3 file format.

0004-637X/842/1/52

Abstract

Observational studies reveal that complex organic molecules (COMs) can be found in various objects associated with different star formation stages. The identification of COMs in prestellar cores, i.e., cold environments in which thermally induced chemistry can be excluded and radiolysis is limited by cosmic rays and cosmic-ray-induced UV photons, is particularly important as this stage sets up the initial chemical composition from which ultimately stars and planets evolve. Recent laboratory results demonstrate that molecules as complex as glycolaldehyde and ethylene glycol are efficiently formed on icy dust grains via nonenergetic atom addition reactions between accreting H atoms and CO molecules, a process that dominates surface chemistry during the "CO freeze-out stage" in dense cores. In the present study we demonstrate that a similar mechanism results in the formation of the biologically relevant molecule glycerol—HOCH2CH(OH)CH2OH—a three-carbon-bearing sugar alcohol necessary for the formation of membranes of modern living cells and organelles. Our experimental results are fully consistent with a suggested reaction scheme in which glycerol is formed along a chain of radical–radical and radical–molecule interactions between various reactive intermediates produced upon hydrogenation of CO ice or its hydrogenation products. The tentative identification of the chemically related simple sugar glyceraldehyde—HOCH2CH(OH)CHO—is discussed as well. These new laboratory findings indicate that the proposed reaction mechanism holds much potential to form even more complex sugar alcohols and simple sugars.

Export citation and abstract BibTeX RIS

1. Introduction

With the increasing sensitivity of astronomical observing facilities, more and more complex organic molecules (COMs) have been identified in space (Halfen et al. 2015; Cernicharo et al. 2016; Jørgensen et al. 2016; McGuire et al. 2016). Gas-phase reactions are not efficient enough to explain many of the observed COM abundances, and it is generally accepted that such species form on the surfaces of icy dust grains by merging smaller species to larger and larger constituents. This idea, supported by numerous laboratory results and astrochemical simulations, indicates that surface reactions, triggered by accreting atoms, impacting cosmic rays and VUV photons, as well as by thermal processing, provide efficient pathways toward molecular complexity (Charnley & Rodgers 2008; Garrod et al. 2008; Herbst & van Dishoeck 2009; Vasyunin & Herbst 2013b; Walsh et al. 2014a, 2014b; Linnartz et al. 2015; Öberg 2016).

Key in the formation of new COMs is the mechanism that extends, for interstellar conditions, the size of a carbon backbone of the precursor molecule with new C–C bonds. Subsequently, these larger species act as parents in new reactions, resulting in the formation of a whole set of other COMs with similar size properties. This holds until another C–C bond is added to one of these reaction products, yielding a parent species that acts as a precursor for another set of even larger COMs, etc. This repeatable process can be best illustrated by the reaction scheme introduced by Charnley et al. (2001) and Charnley & Rodgers (2008). During the "catastrophic CO freeze-out" in dense cores, accreting CO molecules produce a layer of CO ice on the icy grain surfaces. Simultaneously, CO molecules undergo partial hydrogenation by accreting H atoms, producing CH3OH in a series of H-atom addition and abstraction reactions that start with the formation of HĊO radicals (Hiraoka et al. 1994; Watanabe & Kouchi 2002; Zhitnikov & Dmitriev 2002; Fuchs et al. 2009; Hidaka et al. 2009). Such "nonenergetic" atom addition reactions, i.e., reactions between species that are in thermalized equilibrium with the grain surface and, therefore, are not able to cross large reaction barriers, play a main role in dark cloud chemistry. The subsequent addition of C atoms to HĊO results in the formation of ·CCHO and ·CCCHO radicals. The latter two intermediates are, in turn, proposed starting points in the formation of entire sets of new COMs through a sequence of H- and O-atom addition reactions. For example, acetaldehyde, ethanol, glyoxal, glycolaldehyde, and ethylene glycol are all produced through a series of atom or molecule additions to ·CCHO radicals. In a similar way, their "three-carbon-bearing" analogues are produced from ·CCCHO intermediates.

The chemical concept of this C-atom addition scenario is straightforward, but requires a long sequence of "site-selective" H-, C- and O-atom additions, making efficient formation of species like glyceraldehyde and ethylene glycol (in which each of the carbon atoms has one oxygen atom attached) unlikely. Moreover, in dense clouds most of the atomic carbon is locked in CO molecules, and fewer carbon atoms are available for accretion on the icy grain surface. Therefore, the formation of these two species has been addressed in another scenario that was experimentally verified by Fedoseev et al. (2015) and later extended by Butscher et al. (2015) and Chuang et al. (2015). In this reaction scheme, a carbon backbone increase is realized through recombination of various C(O)-bearing intermediate radicals that are produced along the CO to CH3OH hydrogenation route (see Figure 8 of Chuang et al. 2015). It was recently proven that direct recombinations of HĊO and ·CH2OH free radicals form glycolaldehyde, ethylene glycol, and, possibly, glyoxal. In this scheme, ethylene glycol may also be formed via two sequential H-atom additions to glycolaldehyde.

In an alternative "energetic processing" scenario, reactive intermediates are formed upon irradiation of CH3OH-rich ices by various energetic particles, including protons, electrons, X-rays, VUV photons, etc. Laboratory studies show that in this case COMs are efficiently formed through recombination of carbon-bearing CH3OH dissociation products (Allamandola et al. 1988; Hudson & Moore 2000; Öberg et al. 2009; Modica & Palumbo 2010; Jheeta et al. 2013; Henderson & Gudipati 2015; Maity et al. 2015; Abou Mrad et al. 2016; Paardekooper et al. 2016a; Chuang et al. 2017). Whereas the "nonenergetic" scenarios are thought to dominate in dark clouds, the latter ones will be more prominent during later stages of the star and planet formation process.

Efficient mechanisms increasing the number of C–C bonds are particularly interesting from an astrobiological point of view. Many of the basic chemical compounds required for the emergence of life consist of chains of carbon atoms with repeatable functional groups, such as (un)saturated fatty acids, simple sugars, and sugar alcohols. The two latter classes deserve special attention, as their smallest members, glycolaldehyde (HOCH2CHO) and ethylene glycol (HOCH2CH2OH), have been successfully observed in the gas phase toward our Galactic center (Hollis et al. 2000, 2002), in solar-mass protostars (Jørgensen et al. 2012, 2016; Coutens et al. 2015; Taquet et al. 2015; Rivilla et al. 2017), and in cometary ices (Biver et al. 2014; Goesmann et al. 2015; Le Roy et al. 2015). It is possible that the mechanism responsible for the formation of glycolaldehyde and ethylene glycol also holds the potential to form the next larger members in these series, glyceraldehyde and glycerol. These molecules are needed in the synthesis of other sugars, sugar alcohols, amino acids, and even a nucleic acid, as proposed in one of the possible early Earth geochemical scenarios (Ritson & Sutherland 2012; Patel et al. 2015; Sutherland 2017). Thus, studying possible formation routes of this type of COM for conditions relevant to star-forming regions, at stages prior to the formation of planets, is particularly intriguing, assuming that at least a fraction of the original icy-dust material survives upon transfer to early planet surfaces.

2. Proposed Reaction Scheme

In this work we experimentally verify an extension of the scenario in which COMs are formed through recombination of reactive carbon-bearing radicals produced along the CO to CH3OH hydrogenation route. It illustrates that the mechanism resulting in the formation of glycolaldehyde and ethylene glycol is also capable of forming larger molecules with a (–C(O)–)n backbone, i.e., glyceraldehyde and glycerol (see Figure 1 for more details). Glycerol (HOCH2CH(OH)CH2OH) is one of the homologues in the sugar alcohol row, a subclass of linear polyols that can be described by the formula HOCH2(CH(OH))nCH2OH. This class of chemical compounds comprises a chain of carbon atoms where each of the carbons is linked to the single hydroxyl (OH) group. With n = 0 this formula is reduced to ethylene glycol, virtually the first representative in this row. The significant structural similarity between glycerol and ethylene glycol (the final product of glycolaldehyde hydrogenation) complicates the successive assignments of glycerol by means of IR spectroscopy, as the vibrational modes of glycerol are nearly identical to those of ethylene glycol and, to some extent, of CH3OH. Broadening of absorption features due to hydrogen bonds further complicates spectroscopic assignments. In a similar way glyceraldehyde links to the series HOCH2(CH(OH))nCHO. In order to circumvent these problems, we use a combination of temperature programmed desorption (TPD) and quadrupole mass spectrometry (QMS). The methodology is described in the next section.

Figure 1.

Figure 1. Proposed reaction scheme demonstrating the repetitive formation of various simple sugars and sugar alcohols starting from hydrogenation of CO molecules on the surface of interstellar grains. Solid line boxes represent stable molecules, while the intermediate radicals are shown in the dashed line boxes. In the case of more than one possible structural isomer, only the relevant one is depicted for simplicity, e.g., both ·CH2OH and CH3O· are formed, but only ·CH2OH is relevant for this scheme, etc. Solid arrows present the reaction pathways discussed in previous experimental studies. The dashed arrows show reaction routes made by extrapolation of these previously obtained results. The reaction routes investigated in the present study, resulting in the formation of glycerol and glyceraldehyde, are highlighted in red. Stereochemistry is omitted for simplicity.

Standard image High-resolution image

The experiments presented below are aimed at reproducing the "CO freeze-out" stage in dense cores (Tielens et al. 1991; Pontoppidan 2006). At this stage external UV fields are to a large extent shielded by dust grains. This results in a significantly higher rate of H-atom accretion events on an ice surface in comparison to the number of impacting VUV photons or cosmic rays, e.g., H-atom flux ∼104 atoms cm−2 s−1 versus UV flux of ∼(1–10) × 103 photons cm−2 s−1 (Prasad & Tarafdar 1983; Chuang et al. 2017). Therefore, the CO hydrogenation composes the core of the reaction scheme presented in Figure 1. CH3OH ice has been observed in dense clouds (Pontoppidan et al. 2003; Bottinelli et al. 2010; Boogert et al. 2015), and its abundance is in line with the predictions of theoretical and modeling work (Tielens & Hagen 1982; Shalabiea & Greenberg 1994; Geppert et al. 2005; Cuppen et al. 2009, 2011; Vasyunin & Herbst 2013a). Recent experimental and theoretical studies demonstrated that two-carbon-bearing COMs, i.e., glycolaldehyde and ethylene glycol, are also formed at this stage (Woods et al. 2012; Fedoseev et al. 2015; Butscher et al. 2015; Chuang et al. 2015). The key point in the formation of these species appears to be the recombination of free intermediate radicals, i.e., HĊO or ·CH2OH, produced in the sequence of H-atom addition and abstraction reactions along the aforementioned CH3OH formation route (see Figure 8 of Chuang et al. 2015 for more details). These experimentally verified reaction pathways compose the left part of the reaction scheme presented in Figure 1 and can be further extrapolated to form even larger species.

Both glycolaldehyde and ethylene glycol can participate in similar H-atom-induced reactions, producing two-carbon-bearing reactive intermediates, e.g., HOCH2ĊHOH. This radical, in turn, can participate in a barrierless recombination with HĊO or ·CH2OH, resulting in the formation of three-carbon-bearing species, i.e., glyceraldehyde and glycerol, the next simple sugar and sugar alcohol representatives in the HOCH2(CH(OH))nCHO and HOCH2(CH(OH))nCH2OH rows, respectively. These formation routes are illustrated in the central part of Figure 1 and are experimentally verified in the present study. In an identical way, the same reaction sequence can be further extrapolated to form four-, five- and more-carbon-bearing representatives. Here, the consecutive increase of the (–C(O)–)n backbone by one segment is achieved each time when an HĊO or ·CH2OH radical reacts with a three-, four-, or more-carbon-bearing precursor, as illustrated in the right part of the reaction scheme. In the figure solid lines represent experimentally verified reaction routes, while dashed lines show their further extrapolation as proposed in this study.

It is important to note that this reaction scheme explains the formation of simple sugars and sugar alcohols already at the cold dark cloud stage, i.e., earlier than in most other suggested chemical scenarios that require thermal heating or irradiation by photons and cosmic rays originating from the newly formed protostar (Garrod & Herbst 2006; Maity et al. 2015; Meinert et al. 2016; Paardekooper et al. 2016a; Taquet et al. 2016).

3. Experimental

The experiments are performed using SURFRESIDE2, an ultra-high-vacuum (UHV) setup that has been described in much detail by Ioppolo et al. (2013). Updated information is available from Fedoseev et al. (2016). A gold-coated substrate is mounted onto the cold tip of an He close-cycle cryostat that is positioned in the center of a UHV main chamber with a typical base pressure of ∼10−10 mbar. The temperature of the substrate is regulated in the range between 13 and 330 K by means of resistive heating and monitored using two thermocouples. A LakeShore 340 temperature controller allows for a 0.5 K relative temperature precision. Two independently prepumped full-metal dosing lines are used for carbon monoxide and glycolaldehyde vapor deposition. The impacting H atoms are obtained through thermal cracking, using a Hydrogen Atom Beam Source (HABS; Tschersich 2000) or through dissociation of ${\rm{H}}{}_{2}$ molecules in a capacitively coupled microwave discharge using a Microwave Atom Source (MWAS; Anton et al. 2000). The two sources are mounted in separate UHV chambers that are connected to the main chamber via UHV shutters. In both systems the produced H atoms and undissociated ${\rm{H}}{}_{2}$ molecules remaining in the H-atom beam are thermalized through collisions inside a bent quartz pipe prior to their impact on the ice substrate in the main chamber. This setting allows a fully independent operation of the individual deposition lines. The use of two different H-atom sources also allows for cross-reference of the obtained results. Both HABS and MWAS are commercial systems. Their fluxes are calibrated "in situ," and the details of this procedure are available from Ioppolo et al. (2013). Typical H-atom fluxes used in the present study amount to 8 × 1012 atoms cm−2 s−1.

Along the proposed reaction scheme a steady abundance decrease is expected with increasing COM size. Previously obtained experimental results show that hydrogenation of pure CO ice yields glycolaldehyde and ethylene glycol, but their final abundances were at the edge of the detection sensitivity. This will prohibit the detection of glyceraldehyde and glycerol in a similar setting. Therefore, here the glycolaldehyde content is artificially increased with respect to the amounts formed in the pure CO hydrogenation experiments. Our assumption is that if the formation yield of glycerol and glyceraldehyde from glycolaldehyde is comparable to that of glycolaldehyde and ethylene glycol starting from CO hydrogenation—HOCH2CHO/H2CO and HOCH2CH2OH/CH3OH ratios of ∼0.01–0.09 were found in Fedoseev et al. (2015)—then the laboratory detection of three-carbon-bearing molecules should be possible. Although this approach greatly enhances the relative yields of newly formed species with respect to the initial amount of CO, the yields of three-carbon-bearing COMs with respect to glycolaldehyde should not be significantly affected, and the successful detection of three-carbon-bearing COMs should validate the overall mechanism proposed here.

The experiments are performed using a "co-deposition" technique. In this case, CO and HOCH2CHO molecules, as well as the H atoms, are exposed to a clean and precooled substrate, resulting in the growth of a uniform ice. Typically ∼1.4 × 1016 molecules cm−2 are deposited over the duration of a 360-minute co-deposition with a 1:1 ratio. The ice composition and the column densities are monitored in situ by means of Reflection Absorption Infrared (RAIR) spectroscopy. The band strengths (cm mol−1) of CO, ${\rm{H}}{}_{2}\mathrm{CO}$, CH3OH, and HOCH2CHO signals are derived using laser (632.8 nm) interference methods, as previously described in Baratta & Palumbo (1998) and Paardekooper et al. (2016b). The values derived for the pure ices are then applied to the ice mixtures. In the experiments 13CO (Sigma-Aldrich, 99% 13C, <5% ${}^{18}{\rm{O}}$ isotope), 13C18O (Sigma-Aldrich, 99% ${}^{13}{\rm{C}}$ and 99% ${}^{18}{\rm{O}}$ isotope), regular CO (Linde 2.0), and ${\rm{H}}{}_{2}$ (Praxair 5.0) are used as gas supplies. The glycolaldehyde vapors are obtained by thermal decomposition of solid glycolaldehyde dimers (Sigma-Aldrich) under vacuum at ∼80 K.

Upon completion of the co-deposition experiment, a TPD measurement is performed, typically with a 5 K minute−1 rate. Sublimating species are recorded in the gas phase, as a function of the ice temperature, using a quadrupole mass spectrometer (QMS), applying 70 eV, i.e., "hard," electron ionization. Dissociative electron impact ionization occurring in the ion source of the QMS causes significant fragmentation of the parent species. The produced QMS spectra are compared with those available in the NIST database5 for similar electron energies. This provides an additional diagnostic tool to the regular assignment based on the sublimation temperature of individual species. Dissociative ionization also comes with the advantage that it allows us to study isotope-labeled experiments, using 13CO and 13C18O, to further constrain assignments by searching for the corresponding shifts in the mass spectra. In addition to the QMS measurements, sublimating ice species can also be monitored by acquiring RAIR difference spectra prior to and after desorption of each of the ice constituents.

All experiments have been performed using both HABS and MWAS and produce similar results. In the following only the HABS results are presented, as these have a lower content of background ${\rm{H}}{}_{2}{\rm{O}}$ contamination. The chosen experiments are also repeated for faster TPD rates of 20 and 25 K minute−1 to obtain higher signal-to-noise ratios for the COM signals. In the latter case, a regular 5 K minute−1 rate is used in the range from 15 to 50 K to remove CO ice, and, subsequently, 20 or 25 K minute−1 rates are applied above 50 K.

4. Results and Discussion

In Figure 2 a typical example of an RAIR spectrum is presented, obtained after the co-deposition of HOCH2CHO and CO molecules with H atoms at 15 K. This spectrum is normalized to 5 × 1015 deposited molecules and compared with five reference spectra recorded for pure HOCH2CHO, HOCH2CH2OH, CO, ${\rm{H}}{}_{2}\mathrm{CO}$, and CH3OH ices. The latter five spectra are each normalized to 1 × 1015 molecules. Along with the RAIR absorption features of the deposited HOCH2CHO and CO molecules, the absorption bands of the three main hydrogenation products—HOCH2CH2OH, ${\rm{H}}{}_{2}\mathrm{CO}$ and CH3OH—can be identified. As discussed in Sections 2 and 3, the detection of the three-carbon-bearing sugar and sugar alcohol homologues, i.e., glycerol and glyceraldehyde, cannot be confirmed based solely on the RAIR data, due to spectral overlap with IR features of the two-carbon-bearing homologues and the relatively low formation yields. Below we address glycerol and glyceraldehyde formation based on the obtained QMS TPD data.

Figure 2.

Figure 2. Solid line: RAIR spectra obtained after the co-deposition of a CO:HOCH2CHO = 1:1 ice mixture with H atoms at 15 K. The total CO and HOCH2CHO fluences amount to 7 × 1015 molecules cm−2, while the total H-atom fluence is 2 × 1017 atoms cm−2. Δ absorbance is normalized to 5 × 1015 deposited molecules. Dashed lines: reference spectra obtained after the deposition of pure HOCH2CHO, HOCH2CH2OH, CO, ${\rm{H}}{}_{2}\mathrm{CO}$, and CH3OH ices at 15 K. Each spectrum is normalized to 1 × 1015 deposited molecules.

Standard image High-resolution image

4.1. Glycerol

For the UHV conditions in SURFRESIDE2, a desorption temperature of glycerol of around 240 K is expected (Kaiser et al. 2015; Paardekooper et al. 2016a). All recorded TPD QMS spectra, obtained after simultaneous deposition of HOCH2CHO with CO molecules and H atoms, reveal the presence of a desorption peak at this temperature. The following evidence of glycerol assignment to this desorption feature can be provided.

In the left panel of Figure 3 an example of a typical TPD QMS spectrum is shown for a temperature range from 60 to 260 K. This spectrum is recorded after co-deposition at 15 K of HOCH2CHO and CO molecules with H atoms for 360 minutes, where molecular deposition rates and H-atom flux amount to 3 × 1011 molecules cm−2 s−1 and 8 × 1012 atoms cm−2 s−1, respectively. Five selected m/z values are plotted in the figure. These are the three characteristic QMS peaks of glycerol, i.e., 31—CH2OH+, 61—HOCH2CHOH+, and 43—${\rm{C}}{}_{2}{{\rm{H}}}_{2}\mathrm{OH}{}^{+}$. The two other m/z values at 62 and 64 are shown for comparison. The glycerol QMS spectrum does not reveal any signal at m/z = 92—the "parent" molecular mass (NIST database; Kaiser et al. 2015), reflecting near complete dissociative ionization of glycerol upon electron impact in the ion source of the QMS. Among the produced characteristic ions, CH2OH+ (m/z = 31) and HOCH2CHOH+ (m/z = 61) are obtained through the cleavage of C–C bonds in glycerol molecules. The m/z = 43 signal (C2H2OH+) is the result of the subsequent loss of an ${\rm{H}}{}_{2}{\rm{O}}$ unit from the HOCH2CHOH+ ion. The m/z signals at 61 and 43 clearly peak around 240 K, while the m/z = 31 signal is to a large extent obscured by the high baseline value that is caused by species desorbing at lower temperatures.

Figure 3.

Figure 3. Left panel: QMS TPD spectra in the range from 60 to 260 K for five selected m/z values obtained after the co-deposition of a CO:HOCH2CHO = 1:1 ice mixture with H atoms at 15 K. Right panel: comparison between the fragments of three QMS TPD spectra in the range from 220 to 260 K. The spectra are obtained after co-deposition at 15 K of HC(O)CH2OH molecules with H atoms and naturally abundant CO (left spectrum), 13CO (central spectrum), or 13C18O (right spectrum) labeled isotopes. All presented experiments are performed for identical experimental conditions. The total CO (13CO, 13C18O) and HOCH2CHO fluences amount to 7 × 1015 molecules cm−2, while the total H-atom fluence is 2 × 1017 atoms cm−2. The ordinate axis is presented in the natural logarithm scale for clarity.

Standard image High-resolution image

Besides the 240 K peak, four other distinct desorption features are observed in this diagram. Two peaks can be assigned to well-known CO hydrogenation products, i.e., ${\rm{H}}{}_{2}\mathrm{CO}$ at ∼100 K and CH3OH at ∼140 K (see Hiraoka et al. 1994; Watanabe & Kouchi 2002; Fuchs et al. 2009). Note that the m/z value at 31 corresponds to the parent mass of naturally occurring ${\rm{H}}{}_{2}$13CO. The intensity of the regular ${\rm{H}}{}_{2}$CO isotope (m/z = 30, not shown here) is about two orders of magnitude higher, in accordance with the ${}^{12}$C/${}^{13}{\rm{C}}$ natural abundance ratio. Two other desorption peaks, at ∼160 and ∼200 K, can be respectively assigned to unprocessed glycolaldehyde, left over after co-deposition, and to HOCH2CH2OH, a known reaction product upon HOCH2CHO hydrogenation (Burke et al. 2015; Fedoseev et al. 2015; Chuang et al. 2015; Maity et al. 2015). The detection of the formed ${\rm{H}}{}_{2}\mathrm{CO}$, CH3OH, and HOCH2CH2OH in addition to the low-volatile product desorbing at 240 K is fully consistent with the reaction scheme presented in Figure 1.

To further constrain the assignment of the glycerol desorption peak at 240 K, isotope-labeled experiments are performed. The co-deposition of HOCH2CHO with CO molecules and H atoms at 15 K is repeated for 13CO and 13C18O. In the case in which CO addition occurs at the edge of an HOCH2CHO molecule (see Figure 1), isotopically enriched glycerol molecules are formed: HOCH2CH(OH)13CH2OH and HOCH2CH(OH)13CH218OH for 13CO and 13C18O, respectively. To our knowledge, the electron-impact-ionization-induced QMS spectra of these two isotopologues have not been reported before, but it is possible to deduce these from the accessible QMS spectra of regular ${}^{12}$C-containing species (NIST database; Kaiser et al. 2015) in the following way.

Glycerol is a symmetric molecule. Assuming that each of the symmetric chemical bonds has an equal probability to break upon 70 eV electron impact, the resulting distribution of m/z intensities can be interpreted. Take as an example the cleavage of C–C bonds of glycerol. As previously discussed, two of the most intense m/z values in the QMS spectrum of glycerol are 31 (CH2OH+) and 61 (HOCH2CHOH+). In the case in which only a single edge carbon or oxygen atom of the glycerol molecule is labeled by the isotope, half of the produced CH2OH+ ions should contain this isotope and half should not. On the contrary, in the case in which a central carbon or oxygen atom in the glycerol molecule is ${}^{13}{\rm{C}}$ or ${}^{18}{\rm{O}}$ labeled, no drop in m/z = 31 signal is expected. A similar conclusion can be deduced for the HOCH2CHOH+ ion where the same 1-to-1 distribution between isotopically labeled and unlabeled fragments should be obtained when the edge carbon or oxygen atom is isotopically labeled. In the case that the central carbon or oxygen is labeled, all resulting HOCH2CHOH+ ions will contain isotopically labeled atoms. Therefore, under the fair assumption that the dissociative ionization cross sections are nearly identical for isotopically labeled and nonlabeled glycerol, a 50% intensity drop at m/z = 61 is expected. The corresponding intensity increase at m/z = 62 or 64 should be observed for HOCH2CH(OH)13CH2OH- or HOCH2CH(OH)13CH218OH-labeled glycerol, respectively. These experiments have been performed, and the resulting TPD spectra obtained after co-deposition of HOCH2CHO with H atoms and CO, 13CO, or 13C18O molecules are shown in the three right panels of Figure 3 in the range from 220 to 260 K. The measurements exhibit the predicted intensity shifts for m/z = 61, 62, and 64. None of the m/z = 62 and m/z = 64 signals exhibit a peak at 240 K for the regular glycerol isotope, whereas in the case of ${}^{13}{\rm{C}}$-labeled carbon monoxide, two peaks can be observed for m/z = 61 and m/z = 62 corresponding to the HOCH2CHOH+ and HO13CH2CHOH+, respectively. In the case of 13C18O, m/z = 61 (HOCH2CHOH+) and m/z = 64 (H18O13CH2CHOH+) peaks are observed, while no rise of m/z = 62 signals is detected.

By extrapolating the procedure described above to other ions observed in the QMS spectra of glycerol, the corresponding HOCH2CH(OH)13CH2OH and HOCH2CH(OH)13CH218OH spectra can be evaluated, from the natural 98.9% ${}^{12}{\rm{C}}$ isotope QMS spectrum of glycerol available in the NIST database. The obtained QMS reference spectra are presented in the top panels of Figure 4. Two m/z ranges are chosen. In the left panel the previously discussed range between m/z = 60 and m/z = 64 is presented, while in the right panel the range between m/z = 43 and m/z = 47 is shown. In the bottom panels, the experimentally obtained intensities are presented for comparison. A good agreement between the evaluated QMS spectra of the different glycerol isotopes and the m/z intensities obtained from our experiments is found. A conclusive fit is obtained for the m/z = 60–64 range, while for the m/z = 43–47 range some discrepancies are observed. These are expected, however. Most of the ions in this range are formed by secondary fragmentation, e.g., ${\rm{H}}{}_{2}{\mathrm{CCOH}}^{+}$ (m/z = 43) is obtained by the loss of an ${\rm{H}}{}_{2}{\rm{O}}$ unit from HOCH2CHOH+ (m/z = 61). The latter ion lacks symmetry. Therefore, a deviation from a statistical 1-to-1 ratio is expected. Furthermore, some of the m/z signals can be caused by more than one ion, e.g., HOCH2CH+, HOCHCH2+, CO2+, etc., all have m/z = 44.

Figure 4.

Figure 4. Top left panel: 70 eV QMS spectra of three distinct glycerol isotopes HOCH2CH(OH)CH2OH (NIST database), and HOCH2CH(OH)13CH2OH with HOCH2CH(OH)13CH218OH (evaluated from the NIST database data in this study). The range from m/z = 60 to m/z = 64 is shown. Bottom left panel: comparison with the QMS intensities obtained at 240 K after the 15 K co-deposition of HOCH2CHO molecules with H atoms and naturally abundant CO (black bars), 13CO (red bars), or 13C18O (blue bars) labeled isotopes. The total CO (13CO, 13C18O) and HOCH2CHO fluences are equal to 7 × 1015 molecules ${\mathrm{cm}}^{-2}$, while the total H-atom fluence amounts to 2 × 1017 atoms ${\mathrm{cm}}^{-2}$. Right panels: same spectra in the range from m/z = 43 to m/z = 47, normalized to the m/z = 43 signal in a regular CO experiment.

Standard image High-resolution image

Based on the fit between the predicted and experimentally obtained glycerol QMS spectra presented in Figure 4, the formation of glycerol in our experiments is concluded. Moreover, the obtained fit confirms that CO addition occurs at the edge of the HOCH2CHO molecules, constraining the mechanism shown in Figure 1. Assuming similar electron impact ionization cross sections and pumping rates of ethylene glycol (the two-carbon-bearing product of glycolaldehyde hydrogenation) and of glycerol (the three-carbon-bearing product), an HOCH2CH(OH)CH2OH/HOCH2CH2OH ratio of about 0.01 is derived from the TPD spectra presented in Figure 2. This indicates that for our experimental conditions, only a limited fraction of the HOCH2CHO molecules contributes to a further extension of the carbon skeleton, as discussed in Section 3.

4.2. Glyceraldehyde

QMS spectra of isotopically labeled HOCH2CH(OH)13CHO and HOCH2CH(OH)13CH18O cannot be extrapolated in a similar way to those in the case of glycerol, due to the lack of molecular symmetry of glyceraldehyde. Nevertheless, several experimental observations have been made. Two desorption temperatures have been reported for pure glyceraldehyde under UHV conditions (McManus 2014). These are 215 and 280 K, and these two desorption peaks were assigned to glyceraldehyde monomers and dimers in the adsorbed multilayers, respectively. Figure 5 shows the fragments of three TPD spectra in the 202–235 K temperature range where thermal desorption of glyceraldehyde monomers is expected. These mass spectra are recorded after the co-deposition of HOCH2CHO with H atoms and CO, 13CO, or 13C18O molecules, respectively, discussed in the glycerol section. The results for the same m/z values as used before, i.e., 31, 43, 61, 62, and 64, are shown, where m/z = 31, 43, and 61 correspond to the most intensive peaks in the glyceraldehyde mass spectrum (NIST database; Brittain et al. 1971). For clarity, the ordinate axis is depicted as a natural logarithm scale, where exponential decay appears as a straight line. A clear deviation from a straight decay starting from 210 K for m/z = 31 and m/z = 43 (and possibly m/z = 61) plots is observed, indicating the appearance of a new species. In this case both the desorption temperature and the affected m/z values are in line with the desorption of glyceraldehyde monomers. Further evidence constraining the desorption of new species between 215 and 220 K is obtained in the 13CO-labeled experiments, in which a clear desorption peak for m/z = 62 is observed, while in the 13C18O-labeled experiment a peak at m/z = 64 may be present. These observations point to the formation of glyceraldehyde in the performed experiments. However, an unambiguous assignment, as in the case of glycerol, is not possible at this stage and requires the use of more sensitive or selective techniques (Maity et al. 2015; Oba et al. 2016; Paardekooper et al. 2016a). However, given the positive identification of glycerol, following the reaction scheme shown in Figure 1, formation of glyceraldehyde is plausible with the observations presented here.

Figure 5.

Figure 5. Comparison between the fragments of three QMS TPD spectra in the range from 202 to 235 K. The spectra are obtained after 15 K co-deposition of HOCH2CHO molecules with H atoms and regular CO (left spectrum), 13CO (central spectrum), or 13C18O (right spectrum) labeled isotopes. The total CO (13CO, 13C18O) and HOCH2CHO fluences amount to 7 × 1015 molecules ${\mathrm{cm}}^{-2}$. The total H-atom fluence amounts to 2 × 1017 atoms cm−2. The ordinate axis is presented as a natural logarithm, and an exponential decay should appear as a straight line. Dashed lines are added to highlight the presence of a distinct source of ions appearing at ∼210 K, consistent with glyceraldehyde desorption.

Standard image High-resolution image

5. Conclusions and Astronomical Relevance

Our laboratory results successfully demonstrate that in accordance with the reaction scheme presented in Figure 1, three-carbon-bearing COMs can be formed starting from simple accretion of H atoms and CO molecules on the surface of interstellar grains. Conclusive evidence for glycerol formation has been obtained in a set of selected isotope-labeled experiments. The formation of glyceraldehyde is shown to be plausible. The reaction scheme presented in Figure 1 is the extension of the well-studied CO + H hydrogenation chain, resulting in the formation of ${\rm{H}}{}_{2}\mathrm{CO}$ and CH3OH ice. This solid-state reaction chain is included in many astrochemical models, to explain solid and gas-phase CH3OH observations in dark clouds and young stellar objects. Thus, the reaction routes investigated in this study can be used to extend already-existing astrochemical simulations. In this respect, the lattice-gas kinetic Monte Carlo simulations are the most promising, as they account for the specific lattice position for each of the intermediate radicals required to form COMs with two, three, and more carbon atoms (Cuppen et al. 2013; Vasyunin & Herbst 2013a; Chang & Herbst 2016; Garrod et al. 2017). However, the direct implications of the formation routes presented in Figure 1 require better knowledge of branching ratios and the activation barriers of various H-atom addition and abstraction reactions. Moreover, the correct implementation of quantum tunneling rate constants is of importance, as these also affect branching ratios for various H-atom addition and abstraction reactions (Lamberts et al. 2016). These issues can be partially overcome by extrapolating branching ratios and activation barriers from similar reactions investigated in previous studies (Fedoseev et al. 2015). In the latter case, the authors employed a model previously used to fit laboratory data of ${\rm{H}}{}_{2}\mathrm{CO}$ and CH3OH formation (Fuchs et al. 2009) and extrapolate the results to astrochemical timescales. H-atom abstraction reactions were omitted, and the effective reaction activation barrier for H-atom addition to the aldehyde group of HOCH2CHO was assumed to be equal to the effective reaction activation barrier of H-atom addition to ${\rm{H}}{}_{2}\mathrm{CO}$ as obtained in Fuchs et al. (2009). In a similar way, a first approximation could be made for H-atom addition to the aldehyde group of HOCH2CH(OH)CHO. The R-ĊHOH/R-CH2O· branching ratios obtained in these H-atom addition reactions can be set to 0.5 or 1 to provide estimates from above for the amount of formed COMs.

With increasing carbon chain length, the expected COM yields reduce strongly for each of the newly added –C(O)–segments. This complicates the assignment of larger species in the experiments starting from pure CO hydrogenation. The ice samples enriched with two-carbon-bearing precursors are used to confirm formation of the three-carbon-bearing COMs and further exploit the reaction scheme shown in Figure 1. In addition to the experimentally obtained HOCH2CH2OH/CH3OH ratio of ∼0.01–0.09 previously reported by Fedoseev et al. (2015), an HOCH2CH(OH)CH2OH/HOCH2CH2OH ratio of ∼0.01 is reported in present study. It should be stressed, however, that this value is obtained under strong assumptions that include similar ionization cross sections and pumping rates of both molecules. Astrochemical simulations are needed to predict astronomically relevant abundance ratios.

Glycolaldehyde and ethylene glycol have been observed in solar-mass protostars. The present study shows that reactions of H and CO with glycolaldehyde can lead to large oxygen-rich COMs in cold dark clouds, i.e., without the need of energetic processing of the ice mantle. Instead, "nonenergetic" H-atom addition and abstraction reactions provide the reactive intermediates to generate glycerol and likely glyceraldehyde. So far, similar results for oxygen-rich three-carbon-bearing COMs were only presented after VUV photon or cosmic-ray irradiation of CH3OH-containing ices, where various reactive intermediates, i.e., ·CH2OH, CH3O·, ·CH3, HĊO, etc., are obtained by CH3OH dissociation with impinging particles (Kaiser et al. 2015; Maity et al. 2015; Paardekooper et al. 2016a). The latter process is effective but lacks the selectivity of an H-atom-induced reaction scheme as shown in Figure 1. Furthermore, H-atom-induced reactions do not cause newly formed species to fragment, in contrast to impinging VUV photons or cosmic rays. It should be stressed, however, that the formation path for simple sugars and sugar alcohols as presented here does not contradict the "energetic route" suggested in these studies. It rather complements these, showing that COMs of astrobiological importance can be formed as early as the cold dark cloud stage, during the CO freeze-out stage, and well before formation of the protostar and heating of the dust occurs. COMs produced on icy dust grains in this early stage of star formation can, in turn, be locked on the grain surface and participate in active energetic processing during later stages, or even be released into the gas phase by shocks, heat, or photodesorption (Charnley & Rodgers 2008; Herbst & van Dishoeck 2009; Caselli & Ceccarelli 2012; Walsh et al. 2014a, 2014b; Jiménez-Serra et al. 2016). Their efficient release into the gas phase by heat and photodesorption is unlikely, however, due to the low volatility of such complex species and a tendency of even the simplest COMs (e.g., CH3OH) to photodissociate and desorb as fragments, rather than as an intact molecule (Bertin et al. 2016). As a consequence, these heavy-weight COMs have a higher chance to remain on grain surfaces during the later stages of ice evolution.

The astronomical importance of our experimental findings is emphasized by the astrobiological role of the obtained species. Glycerol is a necessary component of phospholipids (consisting of fatty acids, glycerol, and inorganic phosphate) composing the membranes of living cells. Glyceraldehyde is the simplest sugar that plays a key role in the energy transfer inside the cells of living organisms. Furthermore, the formation of glycerol and glyceraldehyde along the steps discussed here means that even larger sugar and sugar alcohols are expected to be formed by hydrogenation of accreting CO molecules, as shown in Figure 1. Thus, the presence of simple sugars and sugar alcohols on young planets is possible under the assumption that at least a fraction of the original icy-dust material survives upon transfer to the early planet surface or, alternatively, is delivered by comets or other celestial bodies during the late bombardment stage of the early Earth. From this point of view, it should be noticed that the reaction scheme suggested in Figure 1 has to result in the formation of racemic mixtures of simple sugars and sugar alcohols, and the selection of D- over L-stereoisomers should occur at one of the later evolutionary stages.

This research was funded through a VICI grant of NWO (the Netherlands Organization for Scientific Research) and A-ERC grant 291141 CHEMPLAN. The financial support by NOVA (the Netherlands Research School for Astronomy) and the Royal Netherlands Academy of Arts and Sciences (KNAW) through a professor prize is acknowledged. G.F. acknowledges the financial support from the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 664931. S.I. acknowledges the Royal Society for financial support and the Holland Research School for Molecular Spectroscopy (HRSMC) for a travel grant. The described work has benefited a lot from collaborations within the framework of the FP7 ITN LASSIE consortium (GA238258).

Footnotes

  • NIST Mass Spec Data Center, S. E. Stein, director, "Mass Spectra" in NIST Chemistry WebBook, NIST Standard Reference Database Number 69, eds. P. J. Linstrom and W. G. Mallard, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.

Please wait… references are loading.
10.3847/1538-4357/aa74dc