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The impact of bonded interactions on the ground-state geometries of a small flexible polymer

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Published under licence by IOP Publishing Ltd
, , Citation Tomas Koci et al 2016 J. Phys.: Conf. Ser. 759 012013 DOI 10.1088/1742-6596/759/1/012013

1742-6596/759/1/012013

Abstract

Bonded interactions in coarse-grained models of elastic polymers are commonly represented by the finitely extensible nonlinear elastic (FENE) potential. In this study, we perform parallel multicanonical Monte Carlo simulations to examine the impact of an additional Lennard-Jones term in the bonded potential on the geometry of ground-state structures of a short polymer. Employing microcanonical inflection point analysis and conformational analysis, we construct a hyper-phase diagram and identify ground-state structures with two distinct geometries.

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10.1088/1742-6596/759/1/012013