This site uses cookies. By continuing to use this site you agree to our use of cookies. To find out more, see our Privacy and Cookies policy.

Highly designable protein structures and inter-monomer interactions

, , , and

Published under licence by IOP Publishing Ltd
, , Citation M R Ejtehadi et al 1998 J. Phys. A: Math. Gen. 31 6141 DOI 10.1088/0305-4470/31/29/006

0305-4470/31/29/6141

Abstract

By exact computer enumeration and combinatorial methods, we have calculated the designability of proteins in a simple lattice hydrophobic-polar model for the protein folding problem. We show that if the strength of the non-additive part of the interaction potential becomes larger than a critical value, the degree of designability of structures will depend on the parameters of the potential. We also show that the existence of a unique ground state is highly sensitive to mutation in certain sites.

Export citation and abstract BibTeX RIS

10.1088/0305-4470/31/29/006