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Calculating transition and reaction rates with nonequilibrium work measurements

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Published under licence by IOP Publishing Ltd
, , Citation Mahmoud Moradi et al 2015 J. Phys.: Conf. Ser. 640 012014 DOI 10.1088/1742-6596/640/1/012014

1742-6596/640/1/012014

Abstract

By combining elements of the nonequilibrium work theorem with Transition Path Theory (TPT), we have developed a formalism for investigating transition pathways and probabilities that may effectively be implemented by means of Steered Molecular Dynamics (SMD) simulations. The workings of this formalism are illustrated by means a simple example based on a diproline peptide.

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10.1088/1742-6596/640/1/012014