SciDAC 2005 Anthony Mezzacappa doi:10.1088/1742-6596/16/1/E01 Tag this article Abstract Cited by Full text PDF (26 KB)

SciDAC: Scientific Discovery through Advanced Computing Michael Strayer doi:10.1088/1742-6596/16/1/E02 Tag this article Abstract Full text PDF (23 KB)

The once and future SciDAC Thom H Dunning Jr doi:10.1088/1742-6596/16/1/E03 Tag this article Abstract References Full text PDF (390 KB)

1 Gyrokinetic particle-in-cell simulations of plasma microturbulence on advanced computing platforms S Ethier, W M Tang and Z Lin doi:10.1088/1742-6596/16/1/001 Tag this article Abstract References Cited by Full text PDF (3.41 MB)

16 Particle-in-cell simulations of electron transport from plasma turbulence: recent progress in gyrokinetic particle simulations of turbulent plasmas Z Lin, G Rewoldt, S Ethier, T S Hahm, W W Lee, J L V Lewandowski, Y Nishimura and W X Wang doi:10.1088/1742-6596/16/1/002 Tag this article Abstract References Cited by Full text PDF (2.61 MB)

25 Nonlinear extended magnetohydrodynamics simulation using high-order finite elements C R Sovinec, D D Schnack, A Y Pankin, D P Brennan, H Tian, D C Barnes, S E Kruger, E D Held, C C Kim, X S Li, D K Kaushik, S C Jardin and the NIMROD Team doi:10.1088/1742-6596/16/1/003 Tag this article Abstract References Cited by Full text PDF (5.28 MB)

35 Electromagnetic mode conversion: understanding waves that suddenly change their nature D B Batchelor, L A Berry, P T Bonoli, M D Carter, M Choi, E D'Azevedo, D A D'Ippolito, N Gorelenkov, R W Harvey, E F Jaeger, J R Myra, H Okuda, C K Phillips, D N Smithe and J C Wright doi:10.1088/1742-6596/16/1/004 Tag this article Abstract References Full text PDF (311 KB)

40 An adaptive mesh semi-implicit conservative unsplit method for resistive MHD R Samtaney, P Colella, T J Ligocki, D F Martin and S C Jardin doi:10.1088/1742-6596/16/1/005 Tag this article Abstract References Cited by Full text PDF (551 KB)

49 Advances in the real-time interpretation of fusion experiments David P Schissel (for the National Fusion Collaboratory Project) doi:10.1088/1742-6596/16/1/006 Tag this article Abstract References Full text PDF (314 KB)

54 Plasmas beyond MHD: two-fluids and symmetry breaking L E Sugiyama, W Park, H R Strauss, G Fu, J Breslau, J Chen and S Klasky doi:10.1088/1742-6596/16/1/007 Tag this article Abstract References Full text PDF (646 KB)

59 Global gyrokinetic particle simulation of turbulence and transport in realistic tokamak geometry W X Wang, Z Lin, W M Tang, W W Lee, S Ethier, J L V Lewandowski, G Rewoldt, T S Hahm and J Manickam doi:10.1088/1742-6596/16/1/008 Tag this article Abstract References Cited by Full text PDF (2.81 MB)

65 Direct numerical simulation of turbulent combustion: fundamental insights towards predictive models Evatt R Hawkes, Ramanan Sankaran, James C Sutherland and Jacqueline H Chen doi:10.1088/1742-6596/16/1/009 Tag this article Abstract References Cited by Full text PDF (1.44 MB)

80 Tools for simulation of laboratory-scale premixed turbulent flames M S Day, J B Bell, J F Grcar, M J Lijewski and V E Beckner doi:10.1088/1742-6596/16/1/010 Tag this article Abstract References Full text PDF (745 KB)

91 Interaction of turbulence, chemistry, and radiation in strained nonpremixed flames Chun Sang Yoo, Hong G Im, Yi Wang and Arnaud Trouvé doi:10.1088/1742-6596/16/1/011 Tag this article Abstract References Cited by Full text PDF (492 KB)

101 Adaptive chemical model reduction H N Najm, J C Lee, M Valorani, D A Goussis and M Frenklach doi:10.1088/1742-6596/16/1/012 Tag this article Abstract References Cited by Full text PDF (142 KB)

107 Development of the RIOT web service and information technologies to enable mechanism reduction for HCCI simulations Karen Schuchardt, Oluwayemisi Oluwole, William Pitz, Larry A Rahn, William H Green Jr, David Leahy, Carmen Pancerella, Magnus Sjöberg and John Dec doi:10.1088/1742-6596/16/1/013 Tag this article Abstract References Cited by Full text PDF (187 KB)

113 Advanced algorithms for computations on block-structured adaptively refined meshes Jaideep Ray, C Kennedy, J Steensland and H Najm doi:10.1088/1742-6596/16/1/014 Tag this article Abstract References Full text PDF (407 KB)

119 Direct numerical simulation of non-premixed flame-wall interactions Y Wang and A Trouvé doi:10.1088/1742-6596/16/1/015 Tag this article Abstract References Full text PDF (193 KB)

124 DNS study of the ignition of n-heptane fuel spray under high pressure and lean conditions Yunliang Wang and Christopher J Rutland doi:10.1088/1742-6596/16/1/016 Tag this article Abstract References Cited by Full text PDF (1.13 MB)

129 QCDOC: project status and first results P A Boyle, D Chen, N H Christ, M Clark, S D Cohen, C Cristian, Z Dong, A Gara, B Joo, C Jung, C Kim, L Levkova, X Liao, G Liu, R D Mawhinney, S Ohta, K Petrov, T Wettig and A Yamaguchi doi:10.1088/1742-6596/16/1/017 Tag this article Abstract References Cited by Full text PDF (1.11 MB)

140 The fundamental constants of Nature from lattice gauge theory simulations Paul Mackenzie doi:10.1088/1742-6596/16/1/018 Tag this article Abstract References Full text PDF (716 KB)

150 Understanding hadron structure from lattice QCD in the SciDAC era and Lattice Hadron Physics Collaboration:, B Bistrovic, R G Edwards, G Fleming, Ph Hägler and J W Negele(presenter), K Orginos, A Pochinsky, D B Renner, D G Richards, W Schroers doi:10.1088/1742-6596/16/1/019 Tag this article Abstract References Cited by Full text PDF (230 KB)

160 Properties of light quarks from lattice QCD simulations and The MILC Collaboration:, C Aubina, C Bernard, C DeTar, Steven Gottlieb, E B Gregory, Urs M Heller, J E Hetrick, L Levkova, F Maresca, J Osborn, D Renner, R L Sugar and D Toussaint doi:10.1088/1742-6596/16/1/020 Tag this article Abstract References Full text PDF (188 KB)

165 National software infrastructure for lattice gauge theory Richard C Brower doi:10.1088/1742-6596/16/1/021 Tag this article Abstract Full text PDF (79 KB)

169 Exploring matter under extreme conditions with numerical simulations Péter Petreczky doi:10.1088/1742-6596/16/1/022 Tag this article Abstract References Cited by Full text PDF (151 KB)

174 First principles calculations of nucleon and pion form factors: understanding the building blocks of nuclear matter from lattice QCD and Lattice Hadron Physics Collaboration:, C Alexandrou, B Bistrovic, R G Edwards, P de Forcrand, G Fleming, P Hägler, J W Negele, K Orginos, A Pochinsky, D B Renner and D G Richards(presenter), W Schroers, A Tsapalis doi:10.1088/1742-6596/16/1/023 Tag this article Abstract References Cited by Full text PDF (199 KB)

179 Lattice QCD and fundamental parameters of the Standard Model Matthew Wingate (for the HPQCD Collaboration) doi:10.1088/1742-6596/16/1/024 Tag this article Abstract References Full text PDF (264 KB)

184 Advanced accelerator simulation research: miniaturizing accelerators from kilometers to meters W B Mori, F S Tsung, C Huang, M Zhou, W Lu, M Tzoufras, V K Decyk, D L Bruhwiler, J R Cary, P Messmer, D A Dimitrov, C Nieter, T Katsouleas, S Deng, A Ghalam, E H Esarey, C G R Geddes, J H Cooley and T M Antonsen Jr doi:10.1088/1742-6596/16/1/025 Tag this article Abstract References Cited by Full text PDF (370 KB)

195 Impact of SciDAC on accelerator projects across the office of science through electromagnetic modeling K Ko, N Folwell, L Ge, A Guetz, V Ivanov, A Kabel, M Kowalski, L Lee, Z Li, C Ng, E Prudencio, G Schussman, R Uplenchwar, L Xiao and ISICs/SAPP Collaborators doi:10.1088/1742-6596/16/1/026 Tag this article Abstract References Full text PDF (879 KB)

205 Achievements in ISICs/SAPP collaborations for electromagnetic modeling of accelerators Lie-Quan Lee, Lixin Ge, Zenghai Li, Cho Ng, Greg Schussman, Kwok Ko and ISICs/SAPP Collaborators doi:10.1088/1742-6596/16/1/027 Tag this article Abstract References Cited by Full text PDF (988 KB)

210 SciDAC advances and applications in computational beam dynamics R Ryne, D Abell, A Adelmann, J Amundson, C Bohn, J Cary, P Colella, D Dechow, V Decyk, A Dragt, R Gerber, S Habib, D Higdon, T Katsouleas, K-L Ma, P McCorquodale, D Mihalcea, C Mitchell, W Mori, C T Mottershead, F Neri, I Pogorelov, J Qiang, R Samulyak, D Serafini, J Shalf, C Siegerist, P Spentzouris, P Stoltz, B Terzic, M Venturini and P Walstrom doi:10.1088/1742-6596/16/1/028 Tag this article Abstract References Full text PDF (310 KB)

215 Simulation of the Fermilab Booster using Synergia Panagiotis Spentzouris and James Amundson doi:10.1088/1742-6596/16/1/029 Tag this article Abstract References Full text PDF (1.05 MB)

220 Optimized materials from first principles simulations: are we there yet? Giulia Galli and Francois Gygi doi:10.1088/1742-6596/16/1/030 Tag this article Abstract References Cited by Full text PDF (592 KB)

233 Fast electronic structure methods for strongly correlated molecular systems Martin Head-Gordon, Gregory J O Beran, Alex Sodt and Yousung Jung doi:10.1088/1742-6596/16/1/031 Tag this article Abstract References Cited by Full text PDF (238 KB)

243 Multiresolution computational chemistry Robert J Harrison, George I Fann, Zhengting Gan, Takeshi Yanai, Shinichiro Sugiki, Ariana Beste and Gregory Beylkin doi:10.1088/1742-6596/16/1/032 Tag this article Abstract References Full text PDF (124 KB)

247 Advanced software for the calculation of thermochemistry, kinetics, and dynamics D M Medvedev, S K Gray, A F Wagner, M Minkoff and R Shepard doi:10.1088/1742-6596/16/1/033 Tag this article Abstract References Full text PDF (174 KB)

252 Advanced computational methods for simulating chemical reactions D L Thompson, A F Wagner and M Minkoff doi:10.1088/1742-6596/16/1/034 Tag this article Abstract References Full text PDF (157 KB)

257 New insights into high temperature superconductivity from a computational solution of the two-dimensional Hubbard model T A Maier, J B White, M Jarrell, P Kent and T C Schulthess doi:10.1088/1742-6596/16/1/035 Tag this article Abstract References Full text PDF (580 KB)

269 Integrated multiscale modeling of molecular computing devices Peter T Cummings and Yongsheng Leng doi:10.1088/1742-6596/16/1/036 Tag this article Abstract References Full text PDF (807 KB)

273 Computational materials science: challenges, opportunities B N Harmon doi:10.1088/1742-6596/16/1/037 Tag this article Abstract References Cited by Full text PDF (55 KB)

277 NanoPSE: Nanoscience Problem Solving Environment for atomistic electronic structure of semiconductor nanostructures Wesley B Jones, Gabriel Bester, Andrew Canning, Alberto Franceschetti, Peter A Graf, Kwiseon Kim, Julien Langou, Lin-Wang Wang, Jack Dongarra and Alex Zunger doi:10.1088/1742-6596/16/1/038 Tag this article Abstract References Cited by Full text PDF (93 KB)

283 Electron transport in molecular systems Vincent Meunier, Wenchang Lu, Jerry Bernholc and Bobby G Sumpter doi:10.1088/1742-6596/16/1/039 Tag this article Abstract References Cited by Full text PDF (298 KB)

287 Scalable molecular dynamics T P Straatsma doi:10.1088/1742-6596/16/1/040 Tag this article Abstract References Full text PDF (236 KB)

300 Overview of neutral territory methods for the parallel evaluation of pairwise particle interactions Kevin J Bowers, Ron O Dror and David E Shaw doi:10.1088/1742-6596/16/1/041 Tag this article Abstract References Cited by Full text PDF (234 KB)

305 Microbial cell modeling via reacting diffusive particles Steven J Plimpton and Alex Slepoy doi:10.1088/1742-6596/16/1/042 Tag this article Abstract References Cited by Full text PDF (572 KB)

310 Macro-Micro Interlocked Simulator Tetsuya Sato doi:10.1088/1742-6596/16/1/043 Tag this article Abstract References Cited by Full text PDF (1.91 MB)

317 The computational future for climate change research Warren M Washington doi:10.1088/1742-6596/16/1/044 Tag this article Abstract References Cited by Full text PDF (742 KB)

325 Geodynamo and mantle convection simulations on the Earth Simulator using the Yin-Yang grid Akira Kageyama and Masaki Yoshida doi:10.1088/1742-6596/16/1/045 Tag this article Abstract References Cited by Full text PDF (2.95 MB)

339 Counting the clouds David A Randall doi:10.1088/1742-6596/16/1/046 Tag this article Abstract References Full text PDF (59 KB)

343 Physically-based global downscaling climate change projections for a full century S J Ghan and T Shippert doi:10.1088/1742-6596/16/1/047 Tag this article Abstract References Full text PDF (968 KB)

348 GM vs biharmonic ocean mixing in the Arctic E C Hunke, J A Lysne, M W Hecht and M E Maltrud doi:10.1088/1742-6596/16/1/048 Tag this article Abstract References Full text PDF (932 KB)

353 Development of an atmospheric climate model with self-adapting grid and physics Joyce E Penner, Michael Herzog, Christiane Jablonowski, Bram van Leer, Robert C Oehmke, Quentin F Stout and Kenneth G Powell doi:10.1088/1742-6596/16/1/049 Tag this article Abstract References Full text PDF (1.56 MB)

358 The history of cosmic baryons: discoveries using advanced computing Michael L Norman doi:10.1088/1742-6596/16/1/050 Tag this article Abstract References Full text PDF (1.13 MB)

370 Discovering new dynamics of core-collapse supernova shock waves John M Blondin doi:10.1088/1742-6596/16/1/051 Tag this article Abstract References Cited by Full text PDF (704 KB)

380 Multigroup models of the convective epoch in core collapse supernovae F Douglas Swesty and Eric S Myra doi:10.1088/1742-6596/16/1/052 Tag this article Abstract References Cited by Full text PDF (275 KB)

390 Toward five-dimensional core-collapse supernova simulations C Y Cardall, A O Razoumov, E Endeve, E J Lentz and A Mezzacappa doi:10.1088/1742-6596/16/1/053 Tag this article Abstract References Full text PDF (536 KB)

395 Toward 2-D and 3-D simulations of core-collapse supernovae with magnetic fields John C Hayes and Stephen W Bruenn doi:10.1088/1742-6596/16/1/054 Tag this article Abstract References Full text PDF (116 KB)

400 Terascale input physics: the role of nuclear electron capture in core collapse supernovae W R Hix, O E B Messer, A Mezzacappa, M Liebendörfer, D J Dean, K Langanke, J Sampaio and G Martínez-Pinedo doi:10.1088/1742-6596/16/1/055 Tag this article Abstract References Full text PDF (134 KB)

405 The physics of flames in Type Ia supernovae M Zingale, S E Woosley, J B Bell, M S Day and C A Rendleman doi:10.1088/1742-6596/16/1/056 Tag this article Abstract References Cited by Full text PDF (554 KB)

410 Unstructured finite element solvers in gyrokinetic turbulence simulations of burning plasmas M F Adams, Y Nishimura and Van Emden Henson doi:10.1088/1742-6596/16/1/057 Tag this article Abstract References Full text PDF (850 KB)

425 Solving large-scale eigenvalue problems in SciDAC applications Chao Yang doi:10.1088/1742-6596/16/1/058 Tag this article Abstract References Cited by Full text PDF (134 KB)

435 Adjoint methods for electromagnetic shape optimization of the low-loss cavity for the International Linear Collider Volkan Akçelik, George Biros, Omar Ghattas, David Keyes, Kwok Ko, Lie-Quan Lee and Esmond G Ng doi:10.1088/1742-6596/16/1/059 Tag this article Abstract References Cited by Full text PDF (232 KB)

446 Anisotropic diffusion in a toroidal geometry Paul F Fischer doi:10.1088/1742-6596/16/1/060 Tag this article Abstract References Full text PDF (714 KB)

456 New multigrid solver advances in TOPS R D Falgout, J Brannick, M Brezina, T Manteuffel and S McCormick doi:10.1088/1742-6596/16/1/061 Tag this article Abstract References Full text PDF (644 KB)

461 MRA and low-separation rank approximation with applications to quantum electronics structures computations G I Fann, R J Harrison and G Beylkin doi:10.1088/1742-6596/16/1/062 Tag this article Abstract References Full text PDF (114 KB)

466 Sensitivity analysis and design optimization through automatic differentiation Paul D Hovland, Boyana Norris, Michelle Mills Strout, Sanjukta Bhowmick and Jean Utke doi:10.1088/1742-6596/16/1/063 Tag this article Abstract References Cited by Full text PDF (372 KB)

471 A TSTT integrated FronTier code and its applications in computational fluid physics Brian Fix, James Glimm, Xiaolin Li, Yuanhua Li, Xinfeng Liu, Roman Samulyak and Zhiliang Xu doi:10.1088/1742-6596/16/1/064 Tag this article Abstract References Full text PDF (220 KB)

476 The roles of sparse direct methods in large-scale simulations X S Li, W Gao, P J R Husbands, C Yang and E G Ng doi:10.1088/1742-6596/16/1/065 Tag this article Abstract References Cited by Full text PDF (198 KB)

481 Advanced 3D Poisson solvers and particle-in-cell methods for accelerator modeling David B Serafini, Peter McCorquodale and Phillip Colella doi:10.1088/1742-6596/16/1/066 Tag this article Abstract References Full text PDF (101 KB)

486 Interoperable geometry and mesh components for SciDAC applications T J Tautges, P Knupp, J A Kraftcheck and H J Kim doi:10.1088/1742-6596/16/1/067 Tag this article Abstract References Cited by Full text PDF (372 KB)

491 Scientific Discovery through Advanced Visualization Kwan-Liu Ma, Eric B Lum, Hongfeng Yu, Hiroshi Akiba, Min-Yu Huang, Yue Wang and Greg Schussman doi:10.1088/1742-6596/16/1/068 Tag this article Abstract References Full text PDF (886 KB)

501 Achievements and challenges for I/O in computational science Robert Ross, Rajeev Thakur and Alok Choudhary doi:10.1088/1742-6596/16/1/069 Tag this article Abstract References Full text PDF (113 KB)

510 Data management on the fusion computational pipeline S Klasky, M Beck, V Bhat, E Feibush, B Ludäscher, M Parashar, A Shoshani, D Silver and M Vouk doi:10.1088/1742-6596/16/1/070 Tag this article Abstract References Cited by Full text PDF (651 KB)

521 OSKI: A library of automatically tuned sparse matrix kernels Richard Vuduc, James W Demmel and Katherine A Yelick doi:10.1088/1742-6596/16/1/071 Tag this article Abstract References Cited by Full text PDF (152 KB)

531 Logistical networking: a global storage network Micah Beck and Terry Moore doi:10.1088/1742-6596/16/1/072 Tag this article Abstract References Full text PDF (231 KB)

536 Component-based software for high-performance scientific computing Yuri Alexeev, Benjamin A Allan, Robert C Armstrong, David E Bernholdt, Tamara L Dahlgren, Dennis Gannon, Curtis L Janssen, Joseph P Kenny, Manojkumar Krishnan, James A Kohl, Gary Kumfert, Lois Curfman McInnes, Jarek Nieplocha, Steven G Parker, Craig Rasmussen and Theresa L Windus doi:10.1088/1742-6596/16/1/073 Tag this article Abstract References Cited by Full text PDF (83 KB)

541 Networking for large-scale science: infrastructure, provisioning, transport and application mapping Nageswara S Rao, Steven M Carter, QishiWu, William R Wing, Mengxia Zhu, Anthony Mezzacappa, Malathi Veeraraghavan and John M Blondin doi:10.1088/1742-6596/16/1/074 Tag this article Abstract References Full text PDF (87 KB)

546 Scalable system software: a component-based approach B Bode, R Bradshaw, E DeBenedictus, N Desai, J Duell, G A Geist, P Hargrove, D Jackson, S Jackson, J Laros, C Lowe, E Lusk, W McLendon, J Mugler, T Naughton, J P Navarro, R Oldfield, N Pundit, S L Scott, M Showerman, C Steffen and K Walker doi:10.1088/1742-6596/16/1/075 Tag this article Abstract References Full text PDF (444 KB)

551 Performance analysis of GYRO: a tool evaluation P Worley, J Candy, L Carrington, K Huck, T Kaiser, G Mahinthakumar, A Malony, S Moore, D Reed, P Roth, H Shan, S Shende, A Snavely, S Sreepathi, F Wolf and Y Zhang doi:10.1088/1742-6596/16/1/076 Tag this article Abstract References Full text PDF (109 KB)

556 FastBit: an efficient indexing technology for accelerating data-intensive science Kesheng Wu doi:10.1088/1742-6596/16/1/077 Tag this article Abstract References Cited by Full text PDF (208 KB)

561 Active Thermochemical Tables: thermochemistry for the 21st century Branko Ruscic, Reinhardt E Pinzon, Gregor von Laszewski, Deepti Kodeboyina, Alexander Burcat, David Leahy, David Montoy and Albert F Wagner doi:10.1088/1742-6596/16/1/078 Tag this article Abstract References Cited by Full text PDF (165 KB)

571 Data Grid tools: enabling science on big distributed data Bill Allcock, Ann Chervenak, Ian Foster, Carl Kesselman and Miron Livny doi:10.1088/1742-6596/16/1/079 Tag this article Abstract References Full text PDF (141 KB)

576 DØ top quark results and their dependence on successful Grid computing Daniel Wicke doi:10.1088/1742-6596/16/1/080 Tag this article Abstract References Full text PDF (185 KB)

586 Advanced tokamak research at the DIII-D National Fusion Facility in support of ITER C M Greenfield and the DIII-D Team doi:10.1088/1742-6596/16/1/081 Tag this article Abstract References Full text PDF (261 KB)

591 ESnet authentication services and trust federations Dhivakaran Muruganantham, Mike Helm and Tony Genovese doi:10.1088/1742-6596/16/1/082 Tag this article Abstract Full text PDF (808 KB)

596 Grid portal architectures for scientific applications M P Thomas, J Burruss, L Cinquini, G Fox, D Gannon, L Gilbert, G von Laszewski, K Jackson, D Middleton, R Moore, M Pierce, B Plale, A Rajasekar, R Regno, E Roberts, D Schissel, A Seth and W Schroeder doi:10.1088/1742-6596/16/1/083 Tag this article Abstract References Cited by Full text PDF (245 KB)

601 The impact of SciDAC on US climate change research and the IPCC AR4 Michael Wehner doi:10.1088/1742-6596/16/1/084 Tag this article Abstract References Full text PDF (187 KB)

606 Computational science for the 21st century Michael Strayer doi:10.1088/1742-6596/16/1/085 Tag this article Abstract Full text PDF (7.90 MB)