Quick search Find article
Quick search
Find article

Frustrated bistability as a means to engineer oscillations in biological systems

S Krishna1, S Semsey2 and M H Jensen1

Show affiliations


Oscillations play an important physiological role in a variety of biological systems. For example, respiration and carbohydrate synthesis are coupled to the circadian clock in cyanobacteria (Ishiura et al 1998 Science 281 1519) and ultradian oscillations with time periods of a few hours have been observed in immune response (NF-κB, Hoffmann et al 2002 Science 298 1241, Neson et al 2004 Science 306 704), apoptosis (p53, Lahav et al 2004 Nat. Genet. 36 53), development (Hes, Hirata et al 2002 Science 298 840) and growth hormone secretion (Plotsky and Vale 1985 Science 230 461, Zeitler et al 1991 Proc. Natl. Acad. Sci. USA 88 8920). Here we discuss how any bistable system can be 'frustrated' to produce oscillations of a desired nature—we use the term frustration, in analogy to frustrated spins in antiferromagnets, to refer to the addition of a negative feedback loop that destabilizes the bistable system. We show that the molecular implementation can use a wide variety of methods ranging from translation regulation, using small non-coding RNAs, to targeted protein modification to transcriptional regulation. We also introduce a simple graphical method for determining whether a particular implementation will produce oscillations. The shape of the resulting oscillations can be readily tuned to produce spiky and asymmetric oscillations—quite different from the shapes produced by synthetic oscillators (Elowitz and Leibler 2000 Nature 403 335, Fung et al 2005 Nature 435 118). The time period and amplitude can also be manipulated and these oscillators are easy to reset or switch on and off using a tunable external input. The mechanism of frustrated bistability could thus prove to be an easily implementable way to synthesize flexible, designable oscillators.


PACS

87.16.Uv Active transport processes

87.15.H- Dynamics of biomolecules

36.20.Hb Configuration (bonds, dimensions)

87.14.E- Proteins

87.14.G- Nucleic acids

Subjects

Soft matter, liquids and polymers

Atomic and molecular physics

Biological physics

Dates

Issue 3 (September 2009)

Received 16 January 2009, accepted for publication 28 April 2009

Published 21 May 2009

 
Image from Frustrated bistability as a means to engineer oscillations in biological systems


  1. Frustrated bistability as a means to engineer oscillations in biological systems

    S Krishna et al 2009 Phys. Biol. 6 036009

  2. Late-Type Near-Contact Eclipsing Binary [HH97] FS Aur-79

    S. J. Austin et al. 2007 The Astronomical Journal 133 1934

  3. Special issue on Statistical and Probabilistic Methods for Metrology

    Walter Bich and Maurice G Cox 2006 Metrologia 43

  4. Nonlinear integral-equation formulation of orthogonal polynomials

    Carl M Bender and E Ben-Naim 2007 J. Phys. A: Math. Theor. 40 F9

  5. Type Ia Supernova Explosion: Gravitationally Confined Detonation

    T. Plewa et al 2004 ApJ 612 L37

  6. Limits on the Abundance of Galactic Planets From 5 Years of PLANET Observations

    M. D. Albrow et al 2001 ApJ 556 L113

  7. Reconnaissance of Suspected Old Novae

    Jeff W. Robertson et al. 2000 The Astronomical Journal 119 1365

  8. Simulating Microscopic Hydrodynamic Phenomena with Dissipative Particle Dynamics

    P. J. Hoogerbrugge and J. M. V. A. Koelman 1992 Europhys. Lett. 19 155

  9. Fluorine Abundances in the Large Magellanic Cloud and ω Centauri: Evidence for Neutrino Nucleosynthesis?

    Katia Cunha et al. 2003 The Astronomical Journal 126 1305

  10. Photometry and Spectroscopy of 11 γ Doradus Stars

    Gregory W. Henry et al. 2007 The Astronomical Journal 133 1421

Related review articles

What's this?
View review articles related to this research to gain an insight into the key trends in this subject area. Related review articles are selected based on PACS/MSC codes, and are no more than three years old.

  1. Non-equilibrium statistical mechanics: from a paradigmatic model to biological transport
  2. Molecular energy transducers of the living cell. Proton ATP synthase: a rotating molecular motor

View by subject




Export








Please login to access our web services, or create an account if you don't yet have one.

You must have cookies enabled in your web browser to be able to login.

Username
Password

Forgotten your password? Get a new one here.