G Tiana et al 2007 Phys. Biol. 4 R1 doi:10.1088/1478-3975/4/2/R01
G Tiana1, S Krishna2, S Pigolotti3, M H Jensen2 and K Sneppen2
Show affiliationsThe development of new techniques to quantitatively measure gene expression in cells has shed light on a number of systems that display oscillations in protein concentration. Here we review the different mechanisms which can produce oscillations in gene expression or protein concentration using a framework of simple mathematical models. We focus on three eukaryotic genetic regulatory networks which show 'ultradian' oscillations, with a time period of the order of hours, and involve, respectively, proteins important for development (Hes1), apoptosis (p53) and immune response (NF-κB). We argue that underlying all three is a common design consisting of a negative feedback loop with time delay which is responsible for the oscillatory behaviour.
87.85.Xd Dynamical, regulatory, and integrative biology
87.16.Yc Regulatory genetic and chemical networks
87.16.Xa Signal transduction and intracellular signaling
Issue 2 (June 2007)
Received 9 March 2007, accepted for publication 2 May 2007
Published 18 May 2007
G Tiana et al 2007 Phys. Biol. 4 R1
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