Chenghang Zong et al 2006 Phys. Biol. 3 83 doi:10.1088/1478-3975/3/1/009
Chenghang Zong1,2, Ting Lu2,3, Tongye Shen1,2 and Peter G Wolynes1,2,3
Show affiliationsMany of the large structures of cells are constructed from fibers. These fibers self-assemble from individual proteins in a far-from-equilibrium fashion. Nonequilibrium self-assembly results in a highly dynamic process at the subcellular level that can be regulated and tuned to carry out many of the biological functions of the cell: growth, division and locomotion. We construct and analyze a nonequilibrium model of the dynamic end of a biological fiber that possesses site-resolved resolution. We solve for the steady states of this nonequilibrium system using a variational method. The results are compared to exact numerical solutions for systems with modest size. Using an effective reaction coordinate, we construct an effective potential from the steady-state distribution. The stochastic transitions of the system can be analyzed in this representation. We then apply this method to model microtubule systems. Predictions for macroscopic catastrophe, rescue and dynamic instability in the steady states are analyzed. We find that the length of the cap of the microtubule is small. The relations between the catastrophe/rescue rate and the growth rate are also discussed.
87.17.Jj Cell locomotion, chemotaxis
87.16.Ka Filaments, microtubules, their networks, and supramolecular assemblies
Issue 1 (March 2006)
Received 15 October 2005, accepted for publication 6 March 2006
Published 31 March 2006
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