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Nonequilibrium self-assembly of linear fibers: microscopic treatment of growth, decay, catastrophe and rescue

Chenghang Zong1,2, Ting Lu2,3, Tongye Shen1,2 and Peter G Wolynes1,2,3

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Many of the large structures of cells are constructed from fibers. These fibers self-assemble from individual proteins in a far-from-equilibrium fashion. Nonequilibrium self-assembly results in a highly dynamic process at the subcellular level that can be regulated and tuned to carry out many of the biological functions of the cell: growth, division and locomotion. We construct and analyze a nonequilibrium model of the dynamic end of a biological fiber that possesses site-resolved resolution. We solve for the steady states of this nonequilibrium system using a variational method. The results are compared to exact numerical solutions for systems with modest size. Using an effective reaction coordinate, we construct an effective potential from the steady-state distribution. The stochastic transitions of the system can be analyzed in this representation. We then apply this method to model microtubule systems. Predictions for macroscopic catastrophe, rescue and dynamic instability in the steady states are analyzed. We find that the length of the cap of the microtubule is small. The relations between the catastrophe/rescue rate and the growth rate are also discussed.


PACS

87.17.Ee Growth and division

87.17.Jj Cell locomotion, chemotaxis

87.16.Ka Filaments, microtubules, their networks, and supramolecular assemblies

87.15.H- Dynamics of biomolecules

87.15.Vv Diffusion

87.15.R- Reactions and kinetics

Subjects

Biological physics

Dates

Issue 1 (March 2006)

Received 15 October 2005, accepted for publication 6 March 2006

Published 31 March 2006

 
The critical surface of vanishing mean velocity found using the exact solutions for a finite length of the fiber end.


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