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A model on the origin of RNA

Toyoyuki Kitamura1,2, Michel Peyrard1 and Santiago Cuesta Lopez1,3

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The theory of the liquid–glass transition is extended to describe the polymerization of RNA in a nucleotide-condensed state. In the glassy state the ribose subunits are joined by a 2'–5' or 3'–5' phosphodiester linkage to form the ribose–phosphate backbone similar to oligosaccharides and polysaccharides. The occurrence of the glass transition requires two conditions: (1) a supercooled state in a nucleotide-condensed state should exist below the temperature at which the whole RNA hydrolyzes; (2) the Gibbs free energy due to the Kauzmann entropy, which obeys a Curie law with a negative sign, must be larger than the height of the potential barrier for nucleotides to overcome to form the binding.


PACS

87.14.G- Nucleic acids

87.15.B- Structure of biomolecules

36.20.Hb Configuration (bonds, dimensions)

87.15.R- Reactions and kinetics

Subjects

Soft matter, liquids and polymers

Atomic and molecular physics

Biological physics

Dates

Issue 3 (September 2005)

Received 8 April 2005, accepted for publication 12 September 2005

Published 29 September 2005

 
Section of a schematic showing nucleotides in a glassy state. A nucleotide consists of nucleoside, phosphate, and an oxygen connected with 2' or 3' of ribose and phosphate PO2-.


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