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Deutsche Physikalische Gessellschaft IOP Institute of Physics

Slave nodes and the controllability of metabolic networks

Dong-Hee Kim1,2,3 and Adilson E Motter1,3

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Recent work on synthetic rescues has shown that the targeted deletion of specific metabolic genes can often be used to rescue otherwise non-viable mutants. This raises a fundamental biophysical question: to what extent can the whole-cell behavior of a large metabolic network be controlled by constraining the flux of one or more reactions in the network? This touches upon the issue of the number of degrees of freedom contained by one such network. Using the metabolic network of Escherichia coli as a model system, here we address this question theoretically by exploring not only reaction deletions, but also a continuum of all possible reaction expression levels. We show that the behavior of the metabolic network can be largely manipulated by the pinned expression of a single reaction. In particular, a relevant fraction of the metabolic reactions exhibits canalizing interactions, in that the specification of one reaction flux determines cellular growth as well as the fluxes of most other reactions in optimal steady states. The activity of individual reactions can thus be used as surrogates to monitor and possibly control cellular growth and other whole-cell behaviors. In addition to its implications for the study of control processes, our methodology provides a new approach to study how the integrated dynamics of the entire metabolic network emerges from the coordinated behavior of its component parts.


PACS

87.15.R- Reactions and kinetics

87.14.G- Nucleic acids

87.18.-h Biological complexity

87.17.Ee Growth and division

Subjects

Biological physics

Dates

Issue 11 (November 2009)

Received 10 August 2009

Published 24 November 2009



  1. Slave nodes and the controllability of metabolic networks

    Dong-Hee Kim and Adilson E Motter 2009 New J. Phys. 11 113047

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